Information for 5-ATTTVCATAK (Motif 4)


Reverse Opposite:

p-value:1e-109
log p-value:-2.531e+02
Information Content per bp:1.653
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif94.6
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets100.5 +/- 63.9bp
Average Position of motif in Background88.8 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:ATTTVCATAK
ATTTGCATAT

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:ATTTVCATAK
ATTTGCATAA

MA0507.1_POU2F2/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---ATTTVCATAK
TTCATTTGCATAT

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----ATTTVCATAK--
TNTAATTTGCATANNN

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----ATTTVCATAK--
TNTAATTTGCATACNA

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATTTVCATAK-----
ATTTGCATAACAATG

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATTTVCATAK-----
ATTTGCATAACAAAG

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATTTVCATAK
ATTTTCCATT-

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATTTVCATAK
TGTTTACTTT-

MA0148.3_FOXA1/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATTTVCATAK
TCCATGTTTACTTTG