Information for 14-ACTGTCTGGC (Motif 20)


Reverse Opposite:

p-value:1e-40
log p-value:-9.286e+01
Information Content per bp:1.530
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif22.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets101.9 +/- 56.9bp
Average Position of motif in Background95.6 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:ACTGTCTGGC
-CTGTCTGG-

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---ACTGTCTGGC----
NNTNNTGTCTGGNNTNG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-ACTGTCTGGC
VBSYGTCTGG-

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.74
Offset:2
Orientation:forward strand
Alignment:ACTGTCTGGC--
--GGTCTGGCAT

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:ACTGTCTGGC----
-CTGTCTGTCACCT

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ACTGTCTGGC----
--TGTCTGDCACCT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ACTGTCTGGC
-TWGTCTGV-

MA0100.2_Myb/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACTGTCTGGC
CCAACTGCCA---

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:ACTGTCTGGC-
-----TTGGCA

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACTGTCTGGC----
AGCTGTCACTCACCT