Information for 2-GCATATTAAAAG (Motif 2)


Reverse Opposite:

p-value:1e-194
log p-value:-4.480e+02
Information Content per bp:1.765
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets93.4 +/- 49.4bp
Average Position of motif in Background142.2 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GCATATTAAAAG
----ATTAAA--

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCATATTAAAAG
ATTTGCATAACAAAG-

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------GCATATTAAAAG
AAAATATGCATAATAAA--

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCATATTAAAAG
ATTTGCATAACAATG-

PB0148.1_Mtf1_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCATATTAAAAG--
AAATAAGAAAAAAC

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCATATTAAAAG----
AATGCAATAAAATTTAT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCATATTAAAAG
--GTCATAAAAN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCATATTAAAAG
-NCYAATAAAA-

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCATATTAAAAG
NGCAATTAAA--

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCATATTAAAAG
GHATATKCAT--