Information for 1-GCCGCCATKTTB (Motif 1)


Reverse Opposite:

p-value:1e-972
log p-value:-2.239e+03
Information Content per bp:1.617
Number of Target Sequences with motif1941.0
Percentage of Target Sequences with motif24.62%
Number of Background Sequences with motif1493.2
Percentage of Background Sequences with motif3.68%
Average Position of motif in Targets99.5 +/- 48.8bp
Average Position of motif in Background107.1 +/- 63.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0095.2_YY1/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATKTTB
GCNGCCATCTTG

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATKTTB
GCCGCCATCTTG

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCCGCCATKTTB
----CCTTTGTT

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCCGCCATKTTB
--TGCCAA----

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCGCCATKTTB----
TGTTCCCATTGTGTACT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCCGCCATKTTB-
---GCCATCTGTT

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCGCCATKTTB
--GGCCATTAAC

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCCGCCATKTTB-
---NCCATTGTTC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCCGCCATKTTB
----CCWTTGTY

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCCGCCATKTTB-
----CCATTGTTC