Schedule for June 20 to June 21, 2016
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Laptop Setup Instructions
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Introduction to High-Performance Computing
Introduction to Compute Canada
Introduction to epigenomics
Additional reading on ChIP-Seq
Additional reading on Methylation analysis
UNIX Preparation tutorials: Please complete tutorials #1-3 on UNIX
Unix cheat sheet
IGV Tutorial: Review how to use IGV Genome Browser if you have not used this tool before.
UCSC Genome Browser tutorial
FastQC Introduction and examples
YouTube Playlist for Recorded Lectures
Recorded Lectures’ Playlist
R Review Session
RScript to use for Review
RScript to view Results
Module 1: Introduction to ChIP Sequencing and Analysis
Lecture on Compute Canada
Using the Guillimin HPC
Module 2: ChIP-Seq Alignment, Peak Calling, and Visualization
Module 3: Introduction to WGBS and Analysis